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Proteins are the active component of a cell, an organ, a tissue, the whole body. They are encoded in the genome, the human genome contains the information for around 22,000 proteins, the tomato genome for more than 30,000. But this is not the final status, proteins get differentially processed, modified, expressed, undergo different interactions, making the biology more complex. From the 22,000 genes, at least 500,000 different proteins are made.
The statement "DNA makes RNA makes Proteins" is a much simplified picture. There is much more happening. Proteins control the expression of proteins, modify DNA and RNA.
Proteomics is the key technique to study proteins in a biological context. Proteomics' techniques enable the identification of new drug targets, of biomarkers for early disease diagnostics and understanding of biological processes.
And they make metabolites, small molecules which transfer information across the cells, they modify proteins, they make lipids and bind to them. To understand biological functions and to understand the development of a disease, all these have to be studied in detail. Genomics only gives a blueprint, Transcriptomics an idea about the proteins present, Proteomics about the working horses in the cell, Systems Biology or Integrated Biology will give the complete complex picture.
To study Integrated Biology many diifferent techniques and approaches have to be brought together.